############################################################################## # This is a dictionary of proposed extensions to the mmCIF dictionary # # for use with the program pdb2cif (H. J. Bernstein, F. C. Bernstein, # # P. E. Bourne, J. Appl. Cryst., 31, to appear, 1988) # # # # These tokens were used in pdb2cif ***WITHOUT*** the 'pdb2cif' prefix # # through version 2.3.4, (see version 0.0.01 of this dictionary) # # # # This dictionary may be obtained from # # ftp://bernstein-plus-sons.com/software/pdb2cif_cif_mm_0.0.02.dic # # # # Comments and suggestions to: yaya@bernstein-plus-sons.com # # # # # ############################################################################## data_pdb2cif_cif_mm.dic _dictionary.title pdb2cif_cif_mm.dic _dictionary.version 0.0.02 _dictionary.datablock_id pdb2cif_cif_mm.dic save__struct_conn.pdb2cif_ptnr1_atom_site_id _item_description.description ; The id of an atom site for the first partner in a bond This data item is a pointer to _atom_site.id in the ATOM_SITE category. ; _item.name '_struct_conn.pdb2cif_ptnr1_atom_site_id' _item.mandatory_code no _item.category_id struct_conn _item_linked.child_name '_struct_conn.pdb2cif_ptnr1_atom_site_id' _item_linked.parent_name '_atom_site.id' _item_aliases.alias_name '_struct_conn.ptnr1_atom_site_id' _item_aliases.dictionary pdb2cif_cif_mm.dic _item_aliases.version '0.0.01' save_ save__struct_conn.pdb2cif_ptnr2_atom_site_id _item_description.description ; The id of an atom site for the second partner in a bond This data item is a pointer to _atom_site.id in the ATOM_SITE category. ; _item.name '_struct_conn.pdb2cif_ptnr2_atom_site_id' _item.mandatory_code no _item.category_id struct_conn _item_linked.child_name '_struct_conn.pdb2cif_ptnr2_atom_site_id' _item_linked.parent_name '_atom_site.id' _item_aliases.alias_name '_struct_conn.ptnr2_atom_site_id' _item_aliases.dictionary pdb2cif_cif_mm.dic _item_aliases.version '0.0.01' save_ save__atom_site.pdb2cif_label_model_id _item_description.description ; A component of the macromolecular identifier for this atomsite. The value of _atom_site.label_model_id associates the atom site with a particular nmr model. ; _item.name '_atom_site.pdb2cif_label_model_id' _item.mandatory_code no _item.category_id 'atom_site' _item_type.code code loop_ _item_linked.child_name _item_linked.parent_name '_struct_mon_prot.pdb2cif_label_model_id' '_atom_site.pdb2cif_label_model_id' '_struct_mon_prot_cis.pdb2cif_label_model_id' '_atom_site.pdb2cif_label_model_id' _item_aliases.alias_name '_atom_site.label_model_id' _item_aliases.dictionary pdb2cif_cif_mm.dic _item_aliases.version '0.0.01' save_ save__struct_mon_prot.pdb2cif_label_model_id _item_description.description ; This data item is a pointer to _atom_site.label_model_id in the ATOM_SITE category. ; _item.name '_struct_mon_prot.pdb2cif_label_model_id' _item.mandatory_code no _item.category_id struct_mon_prot _item_aliases.alias_name '_struct_mon_prot.label_model_id' _item_aliases.dictionary pdb2cif_cif_mm.dic _item_aliases.version '0.0.01' save_ save__struct_mon_prot_cis.pdb2cif_label_model_id _item_description.description ; This data item is a pointer to _atom_site.label_model_id in the ATOM_SITE category. ; _item.name '_struct_mon_prot_cis.pdb2cif_label_model_id' _item.mandatory_code no _item.category_id struct_mon_prot_cis _item_aliases.alias_name '_struct_mon_prot_cis.label_model_id' _item_aliases.dictionary pdb2cif_cif_mm.dic _item_aliases.version '0.0.01' save_ save__struct_ref_seq_dif.pdb2cif_db_seq_num _item_description.description ; The sequence position in the referenced database entry corresponding to this point difference position. The use of . for _struct_ref_seq_dif.pdb2cif_db_seq_num when a value has been given for _struct_ref_seq_dif.seq_num indicates that there has been an insertion at this position. The use of . for _struct_ref_seq_dif.seq_num when a value is given for _struct_ref_seq_dif.pdb2cif_db_seq_num indicates that there has been a deletion at this position. ; _item.name '_struct_ref_seq_dif.pdb2cif_db_seq_num' _item.mandatory_code no _item.category_id struct_ref_seq_dif loop_ _item_range.maximum _item_range.minimum . 1 1 1 _item_type.code int _item_aliases.alias_name '_struct_ref_seq_dif.db_seq_num' _item_aliases.dictionary pdb2cif_cif_mm.dic _item_aliases.version '0.0.01' save_ ######################## ## DICTIONARY_HISTORY ## ######################## loop_ _dictionary_history.version _dictionary_history.update _dictionary_history.revision '0.0.01' '1997-12-16' ; Dictionary created with tokens in use in pdb2cif version 2.3.4 ; '0.0.02' '1997-12-16' ; Dictionary revised to use 'pdb2cif' prefix to conform to update policy ;