#!/bin/sh ########################################################################### # RasMol 2.7.4.2 # # # # RasMol # # Molecular Graphics Visualisation Tool # # 19 November 2007 # # # # Based on RasMol 2.6 by Roger Sayle # # Biomolecular Structures Group, Glaxo Wellcome Research & Development, # # Stevenage, Hertfordshire, UK # # Version 2.6, August 1995, Version 2.6.4, December 1998 # # Copyright (C) Roger Sayle 1992-1999 # # # # and Based on Mods by # # Author Version, Date Copyright # # # # Arne Mueller RasMol 2.6x1 May 98 (C) Arne Mueller 1998 # # # # Gary Grossman and RasMol 2.5-ucb Nov 95 (C) UC Regents/ModularCHEM# # Marco Molinaro RasMol 2.5-ucb Nov 96 Consortium 1995, 1996 # # # # Philippe Valadon RasTop 1.3 Aug 00 (C) Philippe Valadon 2000 # # # # Herbert J. RasMol 2.7.0 Mar 99 (C) Herbert J. Bernstein # # Bernstein RasMol 2.7.1 Jun 99 1998-2008 # # RasMol 2.7.1.1 Jan 01 # # RasMol 2.7.2 Aug 00 # # RasMol 2.7.2.1 Apr 01 # # RasMol 2.7.2.1.1 Jan 04 # # RasMol 2.7.3 Feb 05 # # RasMol 2.7.3.1 Apr 06 # # RasMol 2.7.4 Nov 07 # # RasMol 2.7.4.2 Mar 08 # # # # RasMol 2.7.3 incorporates changes by Clarice Chigbo, Ricky Chachra, # # and Mamoru Yamanishi. Work on RasMol 2.7.3 supported in part by # # grants DBI-0203064, DBI-0315281 and EF-0312612 from the U.S. National # # Science Foundation and grant DE-FG02-03ER63601 from the U.S. Department # # of Energy. RasMol 2.7.4 incorporates changes by G. Todorov, Nan Jia, # # N. Darakev, P. Kamburov, G. McQuillan, J. Jemilawon. Work on RasMol # # 2.7.4 supported in part by grant 1R15GM078077-01 from the National # # Institute of General Medical Sciences (NIGMS). The content is solely # # the responsibility of the authors and does not necessarily represent # # the official views of the funding organizations. # # # # and Incorporating Translations by # # Author Item Language # # Isabel Servan Martinez, # # Jose Miguel Fernandez Fernandez 2.6 Manual Spanish # # Jose Miguel Fernandez Fernandez 2.7.1 Manual Spanish # # Fernando Gabriel Ranea 2.7.1 menus and messages Spanish # # Jean-Pierre Demailly 2.7.1 menus and messages French # # Giuseppe Martini, Giovanni Paolella, 2.7.1 menus and messages # # A. Davassi, M. Masullo, C. Liotto 2.7.1 help file Italian # # G. Pozhvanov 2.7.3 menus and messages Russian # # G. Todorov 2.7.3 menus and messages Bulgarian# # Nan Jia, G. Todorov 2.7.3 menus and messages Chinese # # Mamoru Yamanishi, Katajima Hajime 2.7.3 menus and messages Japanese # # # # This Release by # # Herbert J. Bernstein, Bernstein + Sons, P.O. Box 177, Bellport, NY, USA # # yaya@bernstein-plus-sons.com # # Copyright(C) Herbert J. Bernstein 1998-2008 # # # # This version is based in directly on RasMol version 2.7.4, on RasMol # # version 2.7.3.1, on RasMol version 2.7.3, on RasMol version 2.7.2.1.1,# # on RasMol version 2.7.2, on RasMol version 2.7.1, on RasMol version # # 2.6_CIF.2, on RasMol version 2.6x1, on RasMol version 2.6.4, and # # RasMol 2.5-ucb and 2.6-ucb. # # # # Please read the file NOTICE for important notices which apply to this # # package and for license terms (GPL or RASLIC). # ########################################################################### # # # rasmol_install.sh # # a script to install rasmol # # This is a version for use with version # of RasMol that supports windows-style # code pages # # H. J. Bernstein, 23 December 2006 # Rev, 15 March 2008 for Rasmol 2.7.4.2 # # Process command line options # VERSION=${RASMOL_VERSION-"RasMol_2_7_4"}; prefix= ; system="no" ; compilefonts="no"; shell="/bin/sh" ; for rasmolarg in "$@" ; do case $rasmolarg in --prefix=* ) prefix=`echo $rasmolarg|sed "s/--prefix=//"`; echo $prefix; ;; --shell=* ) shell=`echo $rasmolarg|sed "s/--shell=//"`; ;; --system ) system="yes" ; ;; --local ) system="no" ; ;; --compilefonts ) compilefonts="yes"; ;; --help | * ) echo "rasmol_install.sh usage:" echo " rasmol_run.sh [--help] | " echo " [--prefix=installdir] |" echo " [--compilefonts] |" echo " [--system] | [--local] " echo " installs rasmol binaries, help files and fonts" echo "" echo "optional variables:" echo " RASMOLPATH path to rasmol directory" echo " RASMOL_LANTIN1FDIR path to X11 ISO 8859-1 font directory" echo " RASMOL_CP1251FDIR path to X11 ISO CP 1251 font directory" echo " RASMOL_CHINESEFDIR path to X11 Intlfonts-1.2.1/Chinese directory" echo " RASMOL_JAPANESEFDIR path to X11 Intlfonts-1.2.1/Japanese.X directory" echo " RASMOL_DEBUG if non-empty, report settings" exit 1; esac; done if [ "$system" = "yes" ] ; then if ! [ `whoami` = "root" ] ; then echo "you must be root to do a system install" echo "rasmsol_install.sh exiting" exit 1; fi fi # Find rasmol target directory # if [ "$prefix" ] ; then RASMOLPATH=$prefix/lib/$VERSION elif [ "$system" = "no" ] ; then if [ "$RASMOLPATH" ] && ! [ -f "$RASMOLPATH" ]; then if ! [ -d "$RASMOLPATH" ] ; then echo -n " Directory \"$RASMOLPATH\" does not exist; create it? [y/N] "; read ok if [ "$ok" = "y" ] || [ "$ok" != "Y" ] ; then mkdir -p "$RASMOLPATH"; fi fi fi for rasmolpath in \ $RASMOLPATH \ $HOME/lib/$VERSION \ ; do if [ -d "$rasmolpath" ]; then savecurdir=`pwd`; cd $rasmolpath; RASMOLPATH=`pwd`; export RASMOLPATH; cd $savecurdir; break 1; fi done else for rasmolpath in \ $RASMOLPATH \ /usr/local/lib/$VERSION \ /usr/lib/$VERSION \ /sw/lib/$VERSION \ ; do echo $rasmolpath if [ -d "$rasmolpath" ]; then savecurdir=`pwd`; cd $rasmolpath; RASMOLPATH=`pwd`; export RASMOLPATH; cd $savecurdir; break 1; fi done fi if ! [ "$RASMOLPATH" ] ; then if [ "$system" = "no" ] ; then RASMOLPATH=$HOME/lib/$VERSION else RASMOLPATH=/usr/lib/$VERSION fi fi if ! [ -d $RASMOLPATH ] ; then if ( ! (mkdir -p $RASMOLPATH ) ) ; then echo "Failed to create $RASMOLPATH"; exit 1; fi fi echo -n "Install rasmol into \"$RASMOLPATH\"? [y/N] "; read ok if [ "$ok" != "y" ] && [ "$ok" != "Y" ] ; then exit 1 ; fi savecurdir=`pwd` ; cd $RASMOLPATH ; rasmolpath=`pwd` ; cd $savecurdir ; libname=`dirname $rasmolpath` if [ "`basename $libname`" = "lib" ] ; then prefix=`dirname $libname` ; bindest=$prefix/bin ; else bindest=$libname ; fi echo -n "Install rasmol program wrapper in \"$bindest/rasmol\"? [y/N] "; read ok if [ "$ok" != "y" ] && [ "$ok" != "Y" ]; then unset bindest ; fi if ! [ -d $bindest ] ; then mkdir -p $bindest ; fi for program in \ rasmol_run.sh \ rasmol_install.sh \ rasmol_32BIT \ rasmol_XFORMS_32BIT \ rasmol_16BIT \ rasmol_XFORMS_16BIT \ rasmol_8BIT \ rasmol_XFORMS_8BIT \ ; do if [ -f $program ] ; then cp $program $RASMOLPATH ; chmod 755 $RASMOLPATH/$program ; elif [ -f ${program}.gz ] ; then gunzip < ${program}.gz > $RASMOLPATH/$program ; chmod 755 $RASMOLPATH/$program ; else echo "Unable to find $program" ; fi if [ "$program" = "rasmol_run.sh" ] && [ -f "$RASMOLPATH/$program" ]; then if [ "$shell" != "/bin/sh" ]; then ed "$RASMOLPATH/$program" <<-EOF_EOF_EOF 1,1s:/bin/sh:$shell: w q EOF_EOF_EOF fi fi done for document in \ rasmol.hlp \ NOTICE \ RASLIC \ GPL \ Licenses.txt \ INSTALL \ README.txt \ ; do if [ -f $document ] ; then cp $document $RASMOLPATH ; chmod 644 $RASMOLPATH/$document ; elif [ -f ${document}.gz ] ; then gunzip < ${document}.gz > $RASMOLPATH/$document ; chmod 644 $RASMOLPATH/$document ; elif [ -f ../$document ] ; then cp ../$document $RASMOLPATH ; chmod 644 $RASMOLPATH/$document ; elif [ -f ../$document.gz ] ; then gunzip < ../$document.gz > $RASMOLPATH/$document ; chmod 644 $RASMOLPATH/$document ; elif [ -d ../doc ] ; then if [ -f ../doc/$document ] ; then cp ../doc/$document $RASMOLPATH/$document ; chmod 644 $RASMOLPATH/$document ; elif [ -f ../doc/${document}.gz ] ; then gunzip < ../doc/${document}.gz > $RASMOLPATH/$document ; chmod 644 $RASMOLPATH/$document ; else echo "Unable to find $document" ; fi else echo "Unable to find $document" ; fi done # Check on availability of ISO 8859-1 fonts for # English, French, German, Italian and Spanish # if ( (xlsfonts -fn "-*-*-bold-o-normal-*-14-*-iso8859-1" | grep "iso8859-1") > /dev/null 2>&1 ); then echo Latin1 \(ISO 8859-1\) fonts available elif [ -d $RASMOLPATH/jmk ] ; then echo Latin1 fonts in $RASMOLPATH/jmk else for latin1fdir in \ $RASMOL_LANTIN1FDIR \ ./jmk-x11-fonts-3.0 \ ./jmk-x11-fonts\ ./jmk \ ../external_packages/jmk-x11-fonts-3.0 \ ../external_packages/jmk-x11-fonts \ $HOME/lib/X11/fonts/jmk-x11-fonts-3.0 \ $HOME/lib/X11/fonts/jmk-x11-fonts \ $HOME/lib/X11/fonts/jmk \ /usr/lib/X11/fonts/jmk-x11-fonts-3.0 \ /usr/lib/X11/fonts/jmk-x11-fonts \ /usr/lib/X11/fonts/jmk \ /sw/lib/X11/fonts/jmk-x11-fonts-3.0 \ /sw/lib/X11/fonts/jmk-x11-fonts \ /sw/lib/X11/fonts/jmk \ /usr/openwin/lib/X11/fonts/jmk-x11-fonts-3.0 \ /usr/openwin/lib/X11/fonts/jmk-x11-fonts \ /usr/openwin/lib/X11/fonts/jmk \ ; do if [ -d $latin1fdir ] ; then savecurdir=`pwd`; cd $latin1fdir; RASMOL_LATIN1FDIR=$latin1fdir; cd $savecurdir; break 1; fi ; done if [ "$RASMOL_LATIN1FDIR" ]; then rm -r -f $RASMOLPATH/jmk ; cp -r -p $RASMOL_LATIN1FDIR $RASMOLPATH/jmk ; echo Installed Latin1 fonts in $RASMOLPATH/jmk if [ "$compilefonts" = "yes" ] ; then savecurdir=`pwd`; cd $RASMOLPATH/jmk; rm -f *.pcf; rm -f *.pcf.gz; rm -f *.pcf.Z; for file in `ls *.bdf`; do bdftopcf $file > `basename $file .bdf`.pcf; done mkfontdir `pwd`; cd $savecurdir; fi else echo Latin1 fonts not found fi fi # Check on availability of Intlfonts-1.2.1 fonts for # Chinese # if ( (xlsfonts -fn "*-16-*-gb2312.1980-0" | grep "gb2312.1980") > /dev/null 2>&1 ); then echo Chinese \(gb2312.1980\) fonts available elif [ -d $RASMOLPATH/Chinese.X ] ; then echo Chinese fonts in $RASMOLPATH/Chinese.X else for chinesefdir in \ $RASMOL_CHINESEFDIR \ ./intlfonts-1.2.1/Chinese.X \ ./Chinese.X \ ../external_packages/intlfonts-1.2.1/Chinese.X \ ../external_packages/Chinese.X \ $HOME/lib/X11/fonts/intlfonts-1.2.1/Chinese.X \ $HOME/lib/X11/fonts/Chinese.X \ /usr/lib/X11/fonts/intlfonts-1.2.1/Chinese.X \ /usr/lib/X11/fonts/Chinese.X \ /sw/lib/X11/fonts/intlfonts-1.2.1/Chinese.X \ /sw/lib/X11/fonts/Chinese.X \ /usr/openwin/lib/X11/fonts/intlfonts-1.2.1/Chinese.X \ /usr/openwin/lib/X11/fonts/Chinese.X \ ; do if [ -d $chinesefdir ] ; then savecurdir=`pwd`; cd $chinesefdir; RASMOL_CHINESEFDIR=$chinesefdir; cd $savecurdir; break 1; fi ; done if [ "$RASMOL_CHINESEFDIR" ]; then rm -r -f $RASMOLPATH/Chinese.X ; cp -r -p $RASMOL_CHINESEFDIR $RASMOLPATH/Chinese.X ; echo Installed Latin1 fonts in $RASMOLPATH/jmk if [ "$compilefonts" = "yes" ] ; then savecurdir=`pwd`; cd $RASMOLPATH/Chinese.X; rm -f *.pcf; rm -f *.pcf.gz; rm -f *.pcf.Z; for file in `ls *.bdf`; do bdftopcf $file > `basename $file .bdf`.pcf; done mkfontdir `pwd`; cd $savecurdir; fi else echo Chinese fonts not found fi fi # Check on availability of Intlfonts-1.2.1 fonts for # Japanese # if ( (xlsfonts -fn "*-r-*-14-*-jisx0208.1983-0" | grep "jisx0208.1983") > /dev/null 2>&1 ); then echo Japanese \(jisx0208.1983\) fonts available elif [ -d $RASMOLPATH/Japanese ] ; then echo Japanese fonts in $RASMOLPATH/Japanese.X else for japanesefdir in \ $RASMOL_JAPANESEFDIR \ ./intlfonts-1.2.1/Japanese.X \ ./Japanese.X \ ../external_packages/intlfonts-1.2.1/Japanese.X \ ../external_packages/Japanese.X \ $HOME/lib/X11/fonts/intlfonts-1.2.1/Japanese.X \ $HOME/lib/X11/fonts/Japanese.X \ /usr/lib/X11/fonts/intlfonts-1.2.1/Japanese.X \ /usr/lib/X11/fonts/Japanese.X \ /sw/lib/X11/fonts/intlfonts-1.2.1/Japanese.X \ /sw/lib/X11/fonts/Japanese.X \ /usr/openwin/lib/X11/fonts/intlfonts-1.2.1/Japanese.X \ /usr/openwin/lib/X11/fonts/Japanese.X \ ; do if [ -d $japanesefdir ] ; then savecurdir=`pwd`; cd $jpapnesefdir; RASMOL_JAPANESEFDIR=$japanesefdir; cd $savecurdir; break 1; fi ; done if [ "$RASMOL_JAPANESEFDIR" ]; then rm -r -f $RASMOLPATH/Japanese.X ; cp -r -p $RASMOL_JAPANESEFDIR $RASMOLPATH/Japanese.X ; echo Installed Latin1 fonts in $RASMOLPATH/jmk if [ "$compilefonts" = "yes" ] ; then savecurdir=`pwd`; cd $RASMOLPATH/Japanese.X; rm -f *.pcf; rm -f *.pcf.gz; rm -f *.pcf.Z; for file in `ls *.bdf`; do bdftopcf $file > `basename $file .bdf`.pcf; done mkfontdir `pwd`; cd $savecurdir; fi else echo Japanese fonts not found fi fi # Check on availability of CP 1251 fonts for # Cyrillic # if ( (xlsfonts -fn "-*-*-bold-o-normal-*-14-*-*1251" | grep "1251") > /dev/null 2>&1 ); then echo CP 1251 fonts available elif [ -d $RASMOLPATH/cyr-rfx-windows-1251 ] ; then echo CP 1251 fonts in $RASMOLPATH/cyr-rfx-windows-1251 else for cp1251fdir in \ $RASMOL_CP1251FDIR \ ./windows-1251 \ ./cyr-rfx-windows-1251-1.1 \ ./cyr-rfx-windows-1251 \ ../external_packages/cyr-rfx-windows-1251-1.1 \ ../external_packages/cyr-rfx-windows-1251 \ $HOME/lib/X11/fonts/windows-1251 \ $HOME/lib/X11/fonts/cyr-rfx-windows-1251-1.1 \ $HOME/lib/X11/fonts/cyr-rfx-windows-1251 \ /usr/lib/X11/fonts/windows-1251 \ /usr/lib/X11/fonts/cyr-rfx-windows-1251-1.1 \ /usr/lib/X11/fonts/cyr-rfx-windows-1251 \ /sw/lib/X11/fonts/windows-1251 \ /sw/lib/X11/fonts/cyr-rfx-windows-1251-1.1 \ /sw/lib/X11/fonts/cyr-rfx-windows-1251 \ ; do if [ -d $cp1251fdir ] && [ -d $cp1251fdir/misc ] && [ -d $cp1251fdir/75dpi ] ; then savecurdir=`pwd`; cd $cp1251fdir; RASMOL_CP1251FDIR=$cp1251fdir; cd $savecurdir; break 1; fi ; done if [ "$RASMOL_CP1251FDIR" ]; then rm -r -f $RASMOLPATH/cyr-rfx-windows-1251 ; cp -r -p $RASMOL_CP1251FDIR $RASMOLPATH/cyr-rfx-windows-1251 ; echo installed CP 1251 fonts in $RASMOLPATH/cyr-rfx-windows-1251 if [ "$compilefonts" = "yes" ] ; then savecurdir=`pwd`; cd $RASMOLPATH/cyr-rfx-windows-1251; for fonts in 75dpi misc; do cd $fonts; rm -f *.pcf; rm -f *.pcf.gz; rm -f *.pcf.Z; for file in `ls *.bdf`; do bdftopcf $file > `basename $file .bdf`.pcf; done mkfontdir `pwd`; cd ..; done cd $savecurdir; fi else echo CP 1251 fonts not found fi fi if [ "$bindest" ] ; then if [ -e "$bindest/rasmol" ]; then if [ -e "$bindest/rasmol_save" ]; then echo "There is an existing \"$bindest/rasmol_save\"" ; echo -n "Replace this file with the prior \"$bindest/rasmol\"? [y/N] " ; read ok ; if [ $ok = "y" ] || [ "$ok" = "Y" ] ; then rm -rf $bindest/rasmol_save ; mv $bindest/rasmol $bindest/rasmol_save ; else echo "There is an existing \"$bindest/rasmol\"" echo -n "Replace this with the new \"$bindest/rasmol\"? [y/N] " read ok ; if [ $ok != "y" ] && [ "$ok" != "Y" ] ; then echo "rasmol_nstall exiting without installing new rasmol wrapper" exit 1; fi fi else mv $bindest/rasmol $bindest/rasmol_old ; fi fi rm -f $bindest/rasmol ; echo "#!$shell" > $bindest/rasmol ; echo "RASMOLPATH=$RASMOLPATH ; export RASMOLPATH" >> $bindest/rasmol; echo "$RASMOLPATH/rasmol_run.sh \"\$@\"" >> $bindest/rasmol; chmod 755 $bindest/rasmol; fi